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Deep Learning Applications for Biomedical Data and Natural Language Processing

The human brain can be seen as an ensemble of interconnected neurons, more or less specialized to solve different cognitive and motor tasks. In computer science, the term deep learning is often applied to signify sets of interconnected nodes, where deep means that they have several computational layers. Development of deep learning is essentially a quest to mimic how the human brain, at least part

Langforia: Language pipelines for annotating large collections of documents.

In this paper, we describe Langforia, a multilingual processing pipeline to annotate texts with multiple layers: formatting, parts of speech, named entities, dependencies, semantic roles, and entity links. Langforia works as a web service, where the server hosts the language processing components and the client, the input and result visualization. To annotate a text or a Wikipedia page, the user c

Multilingual Supervision of Semantic Annotation

In this paper, we investigate the annotation projection of semantic units in a practical setting. Previous approaches have focused on using parallel corpora for semantic transfer. We evaluate an alternative approach using loosely parallel corpora that does not require the corpora to be exact translations of each other. We developed a method that transfers semantic annotations from one language to

Automatic Creation of Multilingual Semantic Networks from Wikipedia

This paper describes the automatic creation of semantic networks from Wikipedia. Following Lipczak et al. (2014), we constructed the graphs corresponding to the semantic networks by merging across languages the categories manually assigned by the users. This results in a network of related concepts for each entity of Wikipedia. We used these networks as a component of an entity linking system. the

Linking, Searching, and Visualizing Entities for the Swedish Wikipedia

In this paper, we describe a new system to extract, index, search, and visualize entities on Wikipedia. To carry out the extraction, we designed a high-performance entity linker and we used a document model to store the resulting linguistic annotations. The entity linker ,HERD, extracts the mentions from text using a string matching Engine and links the mto entities with a combination of rules, Pa

Docforia: A Multilayer Document Model

In this paper, we describe Docforia, a multilayer document model and application programming interface (API) to store formatting, lexical, syntactic, and semantic annotations on Wikipedia and other kinds of text and visualize them. While Wikipedia has become a major NLP resource, its scale and heterogeneity makes it relatively difficult to do experimentations on the whole corpus. These experimentat

Coreference Resolution for Swedish and German using Distant Supervision

Coreference resolution is the identification of phrases that refer to the same entity in a text. Current techniques to solve coreferences use machine-learning algorithms, which require large annotated data sets. Such annotated Resources are no tavailable for most languages today. In this paper, we describe a method for solving coreferences for Swedish and German using distant supervision that does

Docforia: A Multilayer Document Model

In this paper, we describe Docforia, a multilayer document model and application programming interface (API) to store formatting, lexical, syntactic, and semantic annotations on Wikipedia and other kinds of text and visualize them. While Wikipedia has become a major NLP resource, its scale and heterogeneity makes it relatively difficult to do experimentations on the whole corpus. These experimentat

Massive MIMO-based Localization and Mapping Exploiting Phase Information of Multipath Components

In this paper, we present a robust multipath-based localization and mapping framework that exploits the phases of specular multipath components (MPCs) using a massive multiple-input multipleoutput (MIMO) array at the base station. Utilizing the phase information related to the propagation distances of the MPCs enables the possibility of localization with extraordinary accuracy even with limited ba

Python for Natural Language Processing : Programming with NumPy, scikit-learn, Keras, and PyTorch: Third Edition

Since the last edition of this book (2014), progress has been astonishing in all areas of Natural Language Processing, with recent achievements in Text Generation that spurred a media interest going beyond the traditional academic circles. Text Processing has meanwhile become a mainstream industrial tool that is used, to various extents, by countless companies. As such, a revision of this book was

Linking Named Entities in Diderot's Encyclopédie to Wikidata

Diderot's Encyclopédie is a reference work from XVIIIth century in Europe that aimed at collecting the knowledge of its era. Wikipedia has the same ambition with a much greater scope. However, the lack of digital connection between the two encyclopedias may hinder their comparison and the study of how knowledge has evolved. A key element of Wikipedia is Wikidata that backs the articles with a grap

Discriminating Against Unrealistic Interpolations in Generative Adversarial Networks

Interpolations in the latent space of deep generative models is one of the standard tools to synthesize semantically meaningful mixtures of generated samples. As the generator function is non-linear, commonly used linear interpolations in the latent space do not yield the shortest paths in the sample space, resulting in non-smooth interpolations. Recent work has therefore equipped the latent space

Mapping the Past : Geographically Linking an Early 20th Century Swedish Encyclopedia with Wikidata

In this paper, we describe the extraction of all the location entries from a prominent Swedish encyclopedia from the early 20th century, the Nordisk Familjebok 'Nordic Family Book.' We focused on the second edition called Uggleupplagan, which comprises 38 volumes and over 182,000 articles. This makes it one of the most extensive Swedish encyclopedias. Using a classifier, we first determined the ca

Critical needs to close monitoring gaps in pan-tropical wetland CH4 emissions

Global wetlands are the largest and most uncertain natural source of atmospheric methane (CH4). The FLUXNET-CH4 synthesis initiative has established a global network of flux tower infrastructure, offering valuable data products and fostering a dedicated community for the measurement and analysis of methane flux data. Existing studies using the FLUXNET-CH4 Community Product v1.0 have provided inval

The short-time iterative adaptive approach : an effective analysis tool for complex non-stationary vibrations

The short-time iterative adaptive approach is a spectral estimation alternative to the short-time Fourier transform for non-stationary vibration analysis. This technique offers a reduction in leakage effects and a higher resolution in exchange for a higher computational complexity. The short-time iterative adaptive approach can be summarized as a high-resolution data-dependent approach which has b

Real-World Applications of Anomaly Detection : Detecting the Unexpected Through Distributional Modelling

In many machine learning tasks, the premise is designed around predetermined targets and clear expectations of model behaviour. In such cases, there is a direct definition of the optimal mappings between inputs and outputs, which can be learned given sufficiently sized datasets and models. However, in many real-world scenarios, tasks are often not as well-posed and instead defined around detecting

Connecting a French Dictionary from the Beginning of the 20th Century to Wikidata

The Petit Larousse illustré is a French dictionary first published in 1905. Its division in two main parts on language and on history and geography corresponds to a major milestone in French lexicography as well as a repository of general knowledge from this period. Although the value of many entries from 1905 remains intact, some descriptions now have a dimension that is more historical than cont

Sparse optimization for nonlinear group delay mode estimation

Nonlinear group delay signals with frequency-varying characteristics are common in a wide variety of fields, for instance, structural health monitoring and fault diagnosis. For such applications, the signal is composed of multiple modes, where each mode may overlap in the frequency-domain. The resulting decomposition and forming of time-frequency representations of the nonlinear group delay modes

Fast and efficient minimal solvers for quadric based camera pose estimation

In this paper we address absolute camera pose estimation. An efficient (and standard) way to solve this problem, is to use sparse keypoint correspondences. In many cases point features are not available, or are unstable over time and viewing conditions. We propose a framework based on silhouettes of quadric surfaces, with special emphasis on cylinders. We provide mathematical analysis of the probl